Leave the stock arms in place. Part of any lift install is to loosen all suspension bolts. With the coils in and jeep back down on the ground, torque the bolts to spec.
This takes some time but important to prevent alignment issues and prolong bushing life.
2007 JKR | PSC Big bore box | Rock Krawler 3.5" x-factor arms l SteerSmarts YETI track bar, tie rod, no drill flipped drag link, Griffin | Synergy frame brace | 37x12.5x17 Nitto RG's | Dana front DS | Fox IFP shocks | Artec front armor kit/Currie JJ's | Teraflex rear axle bracket | EVO Rockstars | Ridged D's, A pillar mounts | VKS sliders l Trek Armor seat covers | Superchips/Sprint booster | Savvy half doors w/ Bestop uppers